NEWS

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stacomiR 0.6.1 (2024-03-03)

• fixed problems with vignette in MacOSX
• fixed problems with Rcheck (manual, old rd artifact, tests ...)
• fixed deprecated aes_string in ggplot2
• fixed problems with arguments in two methods manual (CRAN note)
• report_mig now only uses a function from report_mig_interannual and not longer runs its connect method, this simplifies the loading.
• fix bug due to change in behaviour after using dbwrite table which now creates a table with local timestamp and cause values to shift one day in report_mig_interannual when inserting from the temporary table
• dev added information for user about the current connexion (host, dbname) in report_mig_mult when silent = FALSE
• dev added info about the number of lines in supprime (report_mig_interannual) and write_database (report_mig)
• fix bug when calling plot(report_sample_char) the values where always collected from envir_stacomi.
• fix bug in plot standard report mig char.
• test added test test coverage now increases to 85 %.
• fix #30 missing month in summary report_mig_interannual
• fix problem of vignette building in mac_OSX
• test trouble with codecovr during tests
• fix #31 Report_annual does not issue a count when no data are present in the db for one year
• dev #14 Added function to get schema list
• dev #19 Choose year of reference in report_mig_interannual
• fix bug in plot.report_mig_mult standard some colors not printed due to changed name.
• fix bug in plot report mig mult wrong legend for standard graph (glass eel was OK)

stacomiR 0.6.0.7 (2022-07-18)

• created function to load schema
• fixed problem with report_mig_char example (broken since new qualitative parameter for age was inserted in the database)
• fixed problem with x scale ugly https://forgemia.inra.fr/stacomi/stacomir/-/issues/27 fixed

stacomiR 0.6.0.6

• allows to load ggplots after plot for report_dc and report_df
• fixes the problem of method for plot no longer working with signature(x = "report_dc", y = "ANY") and changed to "missing"
• allows to pass arguments for colors in plot.report_dc
• fixed problems with broken translation see https://forgemia.inra.fr/stacomi/stacomir/-/issues/20

stacomiR 0.6.0.5

• fixes the way environmental stations are loaded.

stacomiR 0.6.0.4

• fixed different output for parameters between charge and charge_with_filter from ref_parquan and ref_parqual.
• the choice_c method also assigns subclasses in envir_stacomi.
• updated the set_as_qualitative method to avoid bugs when running it several times.
• rewrote tests

stacomiR 0.6.0.3

• fixed problems for report interannual, allowing it for several DC including the graphs
• fixed but in report_mig / report_mig_mug write database for numbers of type "PONCTUEL"
• fixed problem in report_interannual, always writing the db when there is a difference between report_mig and report_annual e.g. when operations are overlapping between years

stacomiR 0.6.0.2

• fixes the way taxa and stage are loaded
• replaced some french labels in slots

stacomiR 0.6.0.1

• Minor fix for Solaris, non portable path '~' now issue a warning asking the user for a new path
• Code coverage 79.2 %

stacomiR 0.6.0 (2021-11-22)

stacomir based on gwidget was dropped from CRAN in May 2020, it has been completely reprogrammed to remove all dependence to gwidget and the graphical interface will be a new shiny package (under developpement). Stacomirtools has been rewritten and submitted to CRAN to connect via pool and DBI.

• added import to package rlang
• Change to adapt to new dplyr format dplyr:n() instead of n() see dplyr breaking change in version 1.0.0
• adapted to stacomirtools new connection and connection options (using pool and DBI instead of RODC)
• removed all dependency to gwidgetRGTK2 so in practise there is no longer a graphical interface, the shiny package is due soon.
• added code of conduct
• rewrote unit tests increased coverage from 50 to 78 %

stacomiR 0.5.4.4

• added import to package rlang
• Change to adapt to new dplyr format dplyr:n() instead of n() see dplyr breaking change in version 1.0.0

stacomiR 0.5.4.3 (2020-03-18)

• fixed problem when report with just one line in one year where total number is zero
• fixed bug in monthly report when there is just a single month
• fixed new bug in report_interannual where no value returned from the database created a character which was crashing the program
• fixed bug in bilan interannual when quantiles were calculated on a single line, now reports exactly the value of that line for all quantiles and avoid crashes.
• fixed problem in plot,report_sample_char,missing-method, a ... additional was documented but not present (sent from CRAN)
• The vignette crashes as the program finds difference between rounded numbers, while I don't understand why, round(sum(datasub$value, na.rm = TRUE), 2) and round(sum(datasub2$value, na.rm = TRUE), 2) are not equal: and provide a difference that is not rounded (e.g. 0.000996741) I have changed the test.

stacomiR 0.5.4.2 (2019-03-06)

• fixed new issues with rounding error when building vignette

stacomiR 0.5.4.1 (2019-01-27)

• fixed issue with prototype generating check warning on CRAN

stacomiR 0.5.4.0 (2018-10-11)

• removed reference to test database, and use of dplyr for internal calculations. Trying to launch as test database with postgres failed on distant computers for tests.... (@marion #484-502)

• Updated testhat tests (@marion @cedric #502-506)

• developped vignette for package (@marion #480-484)

stacomiR 0.5.3.2

• changed stacomiR-package.md according to Kurt Hornik (CRAN) demand to use macro in share (@cedric #481)

• bug in interface report_dc corrected (@cedric #489)

• Problem with ceilPOSIXt now named only ceil in package Hmisc. (@cedric #489)

stacomiR 0.5.3.1 (2018-01-04)

• added and edited readme.Rmd file (@cedric and @marion #447-#452)

• compilation of messages, fixes bug for for some year in report_mig_mult (@cedric #444)

• Editing translation messages (@cedric #446)

• fix bug for setasqualitative method in report_sea__age (@cedric #443)

• updated documentation (@cedric #440)

• Modification in glass eel graph (@cedric #441)

• changes to the summary-report_mig_interannual-method (@cedric # 439)

• change to the presentation page in R-forge (@timothée #425 #436-#438)

stacomiR 0.5.3 (2017-06-26)

• Language with poedit (@cedric and @timothee).

• suppress all assignments to .globalEnv.

• adapt documentation and package to pass with zero warning and zero note.

stacomiR 0.5.2

• Development of the command line interface (@cedric)

• Adaptation to the database change to adapt French SANDRE directives (@cedric)

• added 4 new report (silver eel, sea age, report_mig_mult, report_annual) and adapted all old script to use in both command line and graphical interface. (@ cedric and @marion)

stacomiR 0.5.1

• tests with testthat (@cedric)

stacomiR 0.5.0

• Roxygen documentation (@cedric)

stacomiR 0.4

• classes adapted to the new database format

stacomiR 0.3

• Adapting to one schema per user in the postgres database

• initial development of all classes following version 0.3 of the database